fix corrupted test, update submodule

fixed: ignore hidden files completely if hidden file sync disabled

src/apps/cli/commands/runCommand.ts

@@ -70,6 +70,7 @@ async function verifyRemoteState(
 
 export async function runCommand(options: CLIOptions, context: CLICommandContext): Promise<boolean> {
     const { databasePath, core, settingsPath } = context;
+    const vaultPath = context.vaultPath || databasePath;
 
     await core.services.control.activated;
     if (options.command === "daemon") {
@@ -235,7 +236,7 @@ export async function runCommand(options: CLIOptions, context: CLICommandContext
             throw new Error("push requires two arguments: <src> <dst>");
         }
         const sourcePath = path.resolve(options.commandArgs[0]);
-        const destinationDatabasePath = toDatabaseRelativePath(options.commandArgs[1], databasePath);
+        const destinationDatabasePath = toDatabaseRelativePath(options.commandArgs[1], vaultPath);
         const sourceData = await fs.readFile(sourcePath);
         const sourceStat = await fs.stat(sourcePath);
         console.log(`[Command] push ${sourcePath} -> ${destinationDatabasePath}`);
@@ -253,7 +254,7 @@ export async function runCommand(options: CLIOptions, context: CLICommandContext
         if (options.commandArgs.length < 2) {
             throw new Error("pull requires two arguments: <src> <dst>");
         }
-        const sourceDatabasePath = toDatabaseRelativePath(options.commandArgs[0], databasePath);
+        const sourceDatabasePath = toDatabaseRelativePath(options.commandArgs[0], vaultPath);
         const destinationPath = path.resolve(options.commandArgs[1]);
         console.log(`[Command] pull ${sourceDatabasePath} -> ${destinationPath}`);
 
@@ -276,7 +277,7 @@ export async function runCommand(options: CLIOptions, context: CLICommandContext
         if (options.commandArgs.length < 3) {
             throw new Error("pull-rev requires three arguments: <src> <dst> <rev>");
         }
-        const sourceDatabasePath = toDatabaseRelativePath(options.commandArgs[0], databasePath);
+        const sourceDatabasePath = toDatabaseRelativePath(options.commandArgs[0], vaultPath);
         const destinationPath = path.resolve(options.commandArgs[1]);
         const rev = options.commandArgs[2].trim();
         if (!rev) {
@@ -333,7 +334,7 @@ export async function runCommand(options: CLIOptions, context: CLICommandContext
         if (options.commandArgs.length < 1) {
             throw new Error("put requires one argument: <dst>");
         }
-        const destinationDatabasePath = toDatabaseRelativePath(options.commandArgs[0], databasePath);
+        const destinationDatabasePath = toDatabaseRelativePath(options.commandArgs[0], vaultPath);
         const content = await readStdinAsUtf8();
         console.log(`[Command] put stdin -> ${destinationDatabasePath}`);
         return await core.serviceModules.databaseFileAccess.storeContent(
@@ -346,7 +347,7 @@ export async function runCommand(options: CLIOptions, context: CLICommandContext
         if (options.commandArgs.length < 1) {
             throw new Error("cat requires one argument: <src>");
         }
-        const sourceDatabasePath = toDatabaseRelativePath(options.commandArgs[0], databasePath);
+        const sourceDatabasePath = toDatabaseRelativePath(options.commandArgs[0], vaultPath);
         console.error(`[Command] cat ${sourceDatabasePath}`);
         const source = await core.serviceModules.databaseFileAccess.fetch(
             sourceDatabasePath as FilePathWithPrefix,
@@ -370,7 +371,7 @@ export async function runCommand(options: CLIOptions, context: CLICommandContext
         if (options.commandArgs.length < 2) {
             throw new Error("cat-rev requires two arguments: <src> <rev>");
         }
-        const sourceDatabasePath = toDatabaseRelativePath(options.commandArgs[0], databasePath);
+        const sourceDatabasePath = toDatabaseRelativePath(options.commandArgs[0], vaultPath);
         const rev = options.commandArgs[1].trim();
         if (!rev) {
             throw new Error("cat-rev requires a non-empty revision");
@@ -397,7 +398,7 @@ export async function runCommand(options: CLIOptions, context: CLICommandContext
     if (options.command === "ls") {
         const prefix =
             options.commandArgs.length > 0 && options.commandArgs[0].trim() !== ""
-                ? toDatabaseRelativePath(options.commandArgs[0], databasePath)
+                ? toDatabaseRelativePath(options.commandArgs[0], vaultPath)
                 : "";
         const rows: { path: string; line: string }[] = [];
 
@@ -429,7 +430,7 @@ export async function runCommand(options: CLIOptions, context: CLICommandContext
         if (options.commandArgs.length < 1) {
             throw new Error("info requires one argument: <path>");
         }
-        const targetPath = toDatabaseRelativePath(options.commandArgs[0], databasePath);
+        const targetPath = toDatabaseRelativePath(options.commandArgs[0], vaultPath);
 
         for await (const doc of core.services.database.localDatabase.findAllNormalDocs({ conflicts: true })) {
             if (doc._deleted || doc.deleted) continue;
@@ -473,7 +474,7 @@ export async function runCommand(options: CLIOptions, context: CLICommandContext
         if (options.commandArgs.length < 1) {
             throw new Error("rm requires one argument: <path>");
         }
-        const targetPath = toDatabaseRelativePath(options.commandArgs[0], databasePath);
+        const targetPath = toDatabaseRelativePath(options.commandArgs[0], vaultPath);
         console.error(`[Command] rm ${targetPath}`);
         return await core.serviceModules.databaseFileAccess.delete(targetPath as FilePathWithPrefix);
     }
@@ -482,7 +483,7 @@ export async function runCommand(options: CLIOptions, context: CLICommandContext
         if (options.commandArgs.length < 2) {
             throw new Error("resolve requires two arguments: <path> <revision-to-keep>");
         }
-        const targetPath = toDatabaseRelativePath(options.commandArgs[0], databasePath) as FilePathWithPrefix;
+        const targetPath = toDatabaseRelativePath(options.commandArgs[0], vaultPath) as FilePathWithPrefix;
         const revisionToKeep = options.commandArgs[1].trim();
         if (revisionToKeep === "") {
             throw new Error("resolve requires a non-empty revision-to-keep");

src/apps/cli/commands/runCommand.unit.spec.ts

@@ -1,3 +1,6 @@
+import * as path from "path";
+import * as fs from "fs/promises";
+import * as os from "os";
 import * as processSetting from "@lib/API/processSetting";
 import { ConnectionStringParser } from "@lib/common/ConnectionString";
 import { configURIBase } from "@lib/common/models/shared.const";
@@ -601,6 +604,45 @@ describe("runCommand abnormal cases", () => {
         expect(exported2).toBe(roundTripInput);
     });
 
+    describe("runCommand with decoupled vault path", () => {
+        it("push resolves target path relative to vaultPath, not databasePath", async () => {
+            const core = createCoreMock();
+            const tempDir = await fs.mkdtemp(path.join(os.tmpdir(), "livesync-test-"));
+            const localVaultPath = path.join(tempDir, "vault");
+            const localDatabasePath = path.join(tempDir, "db");
+            await fs.mkdir(localVaultPath);
+            await fs.mkdir(localDatabasePath);
+
+            const fileInVault = path.join(localVaultPath, "existing.md");
+            await fs.writeFile(fileInVault, "hello", "utf-8");
+
+            const decoupledContext = {
+                databasePath: localDatabasePath,
+                vaultPath: localVaultPath,
+                settingsPath: path.join(localDatabasePath, ".livesync/settings.json"),
+            } as any;
+
+            const options = {
+                command: "push" as const,
+                commandArgs: [fileInVault, fileInVault],
+                databasePath: localDatabasePath,
+                vaultPath: localVaultPath,
+            };
+
+            try {
+                const result = await runCommand(options, { ...decoupledContext, core });
+                expect(result).toBe(true);
+                expect(core.serviceModules.storageAccess.writeFileAuto).toHaveBeenCalledWith(
+                    "existing.md",
+                    expect.any(ArrayBuffer),
+                    expect.any(Object)
+                );
+            } finally {
+                await fs.rm(tempDir, { recursive: true, force: true });
+            }
+        });
+    });
+
     describe("mark-resolved and unlock-remote commands", () => {
         it("mark-resolved without args runs on active database", async () => {
             const core = createCoreMock();

src/apps/cli/commands/types.ts

@@ -46,6 +46,7 @@ export interface CLIOptions {
 
 export interface CLICommandContext {
     databasePath: string;
+    vaultPath: string;
     core: LiveSyncBaseCore<ServiceContext, any>;
     settingsPath: string;
     originalSyncSettings: Pick<

src/apps/cli/main.ts

@@ -329,8 +329,20 @@ export async function main() {
         options.command === "mirror" && options.commandArgs[0]
             ? path.resolve(options.commandArgs[0])
             : options.vaultPath
-                ? path.resolve(options.vaultPath)
-                : databasePath!;
+              ? path.resolve(options.vaultPath)
+              : databasePath!;
+
+    // Check if vault directory exists
+    try {
+        const stat = await fs.stat(vaultPath);
+        if (!stat.isDirectory()) {
+            console.error(`Error: Vault path ${vaultPath} is not a directory`);
+            process.exit(1);
+        }
+    } catch (error) {
+        console.error(`Error: Vault directory ${vaultPath} does not exist`);
+        process.exit(1);
+    }
 
     infoLog(`Self-hosted LiveSync CLI`);
     infoLog(`Database Path: ${databasePath}`);
@@ -541,7 +553,7 @@ export async function main() {
             infoLog("");
         }
 
-        const result = await runCommand(options, { databasePath, core, settingsPath, originalSyncSettings });
+        const result = await runCommand(options, { databasePath, vaultPath, core, settingsPath, originalSyncSettings });
         if (!result) {
             console.error(`[Error] Command '${options.command}' failed`);
             process.exitCode = 1;

src/apps/cli/test/test-decoupled-vault-linux.sh

@@ -0,0 +1,83 @@
+#!/usr/bin/env bash
+set -euo pipefail
+
+SCRIPT_DIR="$(cd -- "$(dirname -- "${BASH_SOURCE[0]}")" && pwd)"
+CLI_DIR="$(cd -- "$SCRIPT_DIR/.." && pwd)"
+cd "$CLI_DIR"
+source "$SCRIPT_DIR/test-helpers.sh"
+display_test_info
+
+RUN_BUILD="${RUN_BUILD:-1}"
+REMOTE_PATH="${REMOTE_PATH:-test/push-pull-decoupled.txt}"
+cli_test_init_cli_cmd
+
+WORK_DIR="$(mktemp -d "${TMPDIR:-/tmp}/livesync-cli-test.XXXXXX")"
+trap 'rm -rf "$WORK_DIR"' EXIT
+
+SETTINGS_FILE="${1:-$WORK_DIR/data.json}"
+
+if [[ "$RUN_BUILD" == "1" ]]; then
+    echo "[INFO] building CLI..."
+    npm run build
+fi
+
+echo "[INFO] generating settings from DEFAULT_SETTINGS -> $SETTINGS_FILE"
+cli_test_init_settings_file "$SETTINGS_FILE"
+
+if [[ -n "${COUCHDB_URI:-}" && -n "${COUCHDB_USER:-}" && -n "${COUCHDB_PASSWORD:-}" && -n "${COUCHDB_DBNAME:-}" ]]; then
+    echo "[INFO] applying CouchDB env vars to generated settings"
+    cli_test_apply_couchdb_settings "$SETTINGS_FILE" "$COUCHDB_URI" "$COUCHDB_USER" "$COUCHDB_PASSWORD" "$COUCHDB_DBNAME"
+else
+    echo "[WARN] CouchDB env vars are not fully set. push/pull may fail unless generated settings are updated."
+    cli_test_mark_settings_configured "$SETTINGS_FILE"
+fi
+
+VAULT_DIR="$WORK_DIR/vault"
+DB_DIR="$WORK_DIR/db"
+mkdir -p "$VAULT_DIR/test"
+mkdir -p "$DB_DIR"
+
+SRC_FILE="$WORK_DIR/push-source.txt"
+PULLED_FILE="$WORK_DIR/pull-result.txt"
+printf 'push-pull-decoupled-test %s\n' "$(date -u +%Y-%m-%dT%H:%M:%SZ)" > "$SRC_FILE"
+
+# 1. Test push command with decoupled vault directory
+echo "[INFO] push with decoupled vault -> $REMOTE_PATH"
+run_cli "$DB_DIR" --vault "$VAULT_DIR" --settings "$SETTINGS_FILE" push "$SRC_FILE" "$REMOTE_PATH"
+
+# 2. Test pull command with decoupled vault directory
+echo "[INFO] pull with decoupled vault <- $REMOTE_PATH"
+run_cli "$DB_DIR" --vault "$VAULT_DIR" --settings "$SETTINGS_FILE" pull "$REMOTE_PATH" "$PULLED_FILE"
+
+if cmp -s "$SRC_FILE" "$PULLED_FILE"; then
+    echo "[PASS] push/pull roundtrip with decoupled vault matched"
+else
+    echo "[FAIL] push/pull roundtrip with decoupled vault mismatch" >&2
+    echo "--- source ---" >&2
+    cat "$SRC_FILE" >&2
+    echo "--- pulled ---" >&2
+    cat "$PULLED_FILE" >&2
+    exit 1
+fi
+
+# 3. Clean up pulled file and vault test directory to verify mirror
+rm -f "$PULLED_FILE"
+rm -rf "$VAULT_DIR/test"
+
+# 4. Test mirror command with decoupled vault directory
+echo "[INFO] mirror with decoupled vault"
+run_cli "$DB_DIR" --vault "$VAULT_DIR" --settings "$SETTINGS_FILE" mirror
+
+RESTORED_FILE="$VAULT_DIR/$REMOTE_PATH"
+if cmp -s "$SRC_FILE" "$RESTORED_FILE"; then
+    echo "[PASS] mirror with decoupled vault matched"
+else
+    echo "[FAIL] mirror with decoupled vault mismatch" >&2
+    echo "--- source ---" >&2
+    cat "$SRC_FILE" >&2
+    echo "--- mirrored/restored ---" >&2
+    cat "$RESTORED_FILE" 2>/dev/null || echo "<none>" >&2
+    exit 1
+fi
+
+echo "[PASS] decoupled database/vault E2E tests successfully completed"

updates.md

@@ -18,7 +18,15 @@ The head note of 0.25 is now in [updates_old.md](https://github.com/vrtmrz/obsid
 
 I should also consider the version numbering for the CLI...
 
+### Improved
+
 - Added new remote database management commands: `remote-status`, `unlock-remote`, `lock-remote`, and `mark-resolved`.
+- Decoupled the database directory path from the actual vault directory path using the `--vault` (or `-V`) option.
+
+### Fixed (preventive)
+
+- Validated that the specified vault path exists and is indeed a directory before starting the CLI.
+- Integrated path resolution and validations for one-off commands (such as `'push'`, `'pull'`, `'cat'`, `'rm'`, `'info'`, and `'resolve'`) against the decoupled vault path instead of the database path.
 
 ## 0.25.73